PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G158200.1
Common NameB456_005G158200, LOC105794382
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 590aa    MW: 63534.6 Da    PI: 9.0166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G158200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057395123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Gorai.005G158200.1 73 FICEVCNKGFQREQNLQLHRRGH 95
                        89*******************88 PP

2zf-C2H213.10.00028149171123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.005G158200.1 149 WKCEKCSKRYAVQSDWKAHSKTC 171
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-77295No hitNo description
PfamPF121712.9E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355100114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-7144169No hitNo description
SMARTSM00355130149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAAASSSTPF FGTREENQNQ MMQVQSSTAT PTSSTAPTTA PQKRKRNHPG TSSDPDAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LRQKTTKEVK RKVYLCPEPT  120
CVHHDPSKAL GDLTGIKKHY SRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARHPTN LSTMGSHHLF GGNHHMSLGL SHVGSQIPPL  240
QDQNQVQPSR NLLRLGSTSG AVKFDHLISP SNPSSLQNMP SSMFFMAEAA NQGFHQDHQS  300
HHGHGLYPNK PLHGLMQLPD LQGSTNNSPT SSNFFNLGFF SNTSATSSIS TSEIGGGQGP  360
ALFPSNMGDQ VGSGMSSLYT TSMQHENISP HMSATALLQK AAQIGSTTSN NTTSTLLRGL  420
GSSLSGGTKS DRPVFSPNFG SNFEGGNGSE TLRSHMEDDS NLQGLMNSLA ANGNSSIFDG  480
GPSHGQDNNF GGFNGSGLTL EPQSSNANFC NVNEAKLHQN LAAGIGGTDK LTLDFLGVGG  540
MVGNISGGFS QREQHGINIS SLEPDMKSSV QPNTEHFGHA KLVKAPRQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.23709e-38flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488199439e-38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084941e-123AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478989.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_012478990.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A0D2NDJ20.0A0A0D2NDJ2_G
STRINGVIT_01s0010g02090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-117indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]